Click on a genome to get to its database page, where you can see
antismash results or download annotations.
Sort by multiple columns using pressing shift when clicking the
sort icon.
To help you navigate the amount of columns you can toggle them
based on categories...
Or reorder them to your liking (although due to the size of the
dataset, that can be slow).
Global search is enabled with regex. Look for Tara genomes with
`TARA_`, or use `_METAG_` to select MAGs only or `_REFG_` for
reference genomes. MAGs from this study can be queried with
`_METAG_[A-Z]{8}` (Excludes Tara MAGs from an other study). To
make sure that you only pick up perfect matches, use `$` at the
end of the word, e.g. `cluster_1$` will only pick up that cluster
and not all numbers starting with 1.
More advanced: Using regex allows for multi-column search.
Basically, the search function is applied to the table with a
double space separator between columns, so, for instance
`TARA_.*;p__Myxococcota;` will filter TARA genomes annotated as
p__Myxococcota by GTDB ,`MARD_.*c*Actinobacteriota;` will filter
MARD genomes annotated as p__Actinobacteriota by GTDB and
`MALA_.*;p__Eremiobacterota.*cluster_8` will filter MALA genomes
annotated as p__Eremiobacterota by GTDB with Specl Species Cluster
8.
You can also move down to the search panes for per column and
numeric filtering. Note that not all the columns are enabled
(usually because they can either be searched or did not appear too
useful), and they may not provide the best filtering options out
of the box: feedback is welcome to improve the user experience.
Export a filtered table, or after applying visibility contraints
as imposed by the Toggle Columns button or selected rows only with
the export button. Prior to any export, selected rows should be
ticked. To select all rows for export, click the Select All button
first.
Depending on your computer/browser searching and filtering might
take some time. For finer control and reactivity feel free to
prefilter/select and export the table to work locally.